Linux

REMS

Resource Entitlement Management System (REMS)

REMS (Resource Entitlement Management System) is a tool for managing access rights to resources, most importantly scientific datasets. A researcher can fill in a data access application which REMS then circulates to the dataser owner (or his/her representative(s)) for review and approval. REMS provides also necessary reporting functionality and the integrations to the dataset catalogue (for dataset metadata import to REMS) and the Policy Enforcement Point (for enforcing the access rights granted on REMS).

REMS has been originally developed for the ELIXIR research infrast

Davix

Davix

Davix is a lightweight toolkit for file access and file management with HTTP Based protocols.
Davix aims to be an easy-to-use, reliable and performant I/O layer for Cloud and Grid Storages.

emgr

Empirical Gramian Framework (emgr)

Empirical gramians can be computed for linear and nonlinear control systems for purposes of model order reduction, uncertainty quantification or system identification.

MetaPath

MetaPath: Metabolic pathway visualisation and analysis (MetaPath)

MetaPath is a tool for the analysis of metabolic pathway and associated visualisation of experimental data. Built on the MetaCyc database it provides an interactive map in which multiple pathways can be simultaneously visualised. Multiple annotations from the MetaCyc database are available including synonyms, associated reactions and pathways and database unification links. Metabolomics change data can be imported via simple CSV formats for visualisation on targeted pathways. Pathways can be mined and removed algorithmically to identify key re

Dynamic federations: storage aggregation using open tools and protocols

Dynamic federations: the Uniform Generic Redirector (UGR) (Dynamic federations: storage aggregation using open tools and protocols)

The Unifor Generic Redirector (UGR) is the core of the Storage federation system that we designed and built to match with the existing and upcoming Grid-related data management architectures. The system is able to federate storage sites and metadata endpoints that expose a suitable data access protocol, into a transparent, high performance storage federation that exposes a unique name space. The architecture can accommodate LFN/PFN algorithmic name translations without the need of catalogues. On the other hand,

openModeller

openModeller

openModeller is a multi-platform C++ framework for ecological niche modelling. It supports different raster formats for environmental data, different formats for species occurrence data and it contains several modelling algorithms. Besides the C++ framework itself, there are command-line tools, a graphical user interface, a web service interface and an API for Python.

GOCDB

GOCDB Grid Information Registry (GOCDB)

A repository for recording and querying for Grid topology information including NGIs, Sites, Services, URLs, Users/Contacts, Service Downtimes. Records what sites/services/downtimes are meant to be functioning at a particular snapshot in time. Provides a Web portal interface and REST style API for querying data in XML Key component of European Grid Infrastructure.

CERMINE

Content ExtRactor and MINEr (CERMINE)

CERMINE is a Java library and a web service for extracting metadata and content from PDF files containing academic publications. CERMINE is written in Java at Centre for Open Science at Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw.

Quantum Espresso

Quantum Espresso

Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials. Quantum ESPRESSO has evolved into a distribution of independent and inter-operable codes in the spirit of an open-source project. The QuantumESPRESSO distribution consists of a “historical” core set of packages and a set of plu

mpi-start

mpi-start

mpi-start is a set of scripts to close the gap between the workload management system of a Grid insfrastructure and the configuration of the nodes on which MPI applications are run. The package is used to help the user start MPI applications on heterogeneous Grid sites.

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