Python

MetaPath

MetaPath: Metabolic pathway visualisation and analysis (MetaPath)

MetaPath is a tool for the analysis of metabolic pathway and associated visualisation of experimental data. Built on the MetaCyc database it provides an interactive map in which multiple pathways can be simultaneously visualised. Multiple annotations from the MetaCyc database are available including synonyms, associated reactions and pathways and database unification links. Metabolomics change data can be imported via simple CSV formats for visualisation on targeted pathways. Pathways can be mined and removed algorithmically to identify key re

GridWay

GridWay Metscheduler (GridWay)

The GridWay Metascheduler enables large-scale, reliable and efficient sharing of computing resources: clusters, supercomputers, stand-alone servers… It supports different LRMS types within a single organization or scattered across several administrative domains. GridWay provides a single point of access to all resources in an organization, from in-house systems to Grid infrastructures and Cloud providers. GridWay supports most of existing Grid middlewares, can be used on main production Grid infrastructures and can access to Cloud resources.

openModeller

openModeller

openModeller is a multi-platform C++ framework for ecological niche modelling. It supports different raster formats for environmental data, different formats for species occurrence data and it contains several modelling algorithms. Besides the C++ framework itself, there are command-line tools, a graphical user interface, a web service interface and an API for Python.

SAM

Service Availability Monitoring (SAM)

SAM is a grid monitoring and reporting system for large-scale production grids.

It builds on top of open-source components such as 

StoRM

Storage Resource Manager (StoRM)

StoRM is a

  •     light
  •     scalable
  •     flexible
  •     high-performance
  •     file system independent
storage manager service (SRM) for generic disk based storage system, compliant with the standard SRM interface version 2.2. StoRM provides data management capabilities in a Grid environment to share, access and transfer data among heterogeneous and geographically distributed data centres.In particular, StoRM works on each

Indico

Integrated Digital Conference (Indico)

Indico is an event management web application. Its initial goal was to provide conference organizers with a set of tools that could help them through the entire conference life cycle. This initial feature set was extended to other events (such as meetings and lectures), and has since grown to include other features such as a full-fledged Room Booking module. Over the last years, Indico also became CERN’s official hub for collaborative tools, providing a common user interface for videoconferencing (MCU-based H232, Vidyo, EVO), chat and webcasting/recording systems. As the proje

EGI Metrics Portal

EGI Metrics Portal

The metrics portal is the culmination of the work initiated by the MIG (Metrics Implementation Group) and transferred to the Operations Automation Team (OAT) in EGEE-III and now to EGI. The main objective is to have a set of metrics that can help to measure project performance and keep track of its evolution. The portal automatically collects all the required data and calculates these metrics displaying all of them in a single place. The portal agglutinates information from different sources like GOCDB, GGUS, GSTAT, etc. using various connectors depending on the

LFC

LCG File Catalog (LFC)

The LCG File catalogue (LFC) offers a hierarchical view of files to users, with a UNIX-like client interface. The LFC catalogue provides:

  • Logical File Name (LFN) to Storage URL (SURL) mappings (via a GUID);
  • Authorisation on its logical

EGI Accounting Portal

EGI Accounting Portal

The EGI Accounting Portal is the global graphical front-end to EGI accounting data. Accounting statistics are available through this portal for the analysis of the different grid users, VO administrators an site administrators. This data is analysed to generate statistical summaries that are made available through a web interface.

  The accounting infrastructure is based on the collection, processing and presentation of CPU resource usage records that are derived from the log files on the Compute Element (CE) and local batch farm. The data are pro

DPM

Disk Pool Manager (DPM)

The Disk Pool Manager (DPM) is a lightweight storage solution for grid sites. It offers a simple way to create a disk-based grid storage element and supports both standard (HTTP/S, NFS 4.1/pNFS) and grid specific protocols (SRM, gridFTP, XROOTD, RFIO) for file management and access.

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